PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615508.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 185aa    MW: 21322.8 Da    PI: 9.8183
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.8e-33106164159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+
  XP_009615508.1 106 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHQGCNVKKQVQRLSKDEGVVVTTYEGMHSHP 164
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-3491164IPR003657WRKY domain
SuperFamilySSF1182901.16E-2998165IPR003657WRKY domain
PROSITE profilePS5081130.148101166IPR003657WRKY domain
SMARTSM007741.6E-38106165IPR003657WRKY domain
PfamPF031061.8E-26107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MENYQHIFPN YSSSSSDQLS LMNMMNNKSH AKEAELTQDN KKSSGFLGLM ASMEAPSSSG  60
VTDHTNSIPY NSNDQNEMKS GKKNKGEKRN KKPRYAFQTR SQVDILDDGY RWRKYGQKAV  120
KNNRFPRSYY RCTHQGCNVK KQVQRLSKDE GVVVTTYEGM HSHPIEKSTD NFEHILTQMQ  180
IYASF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2896163774Probable WRKY transcription factor 4
2lex_A1e-2896163774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7434331e-113AY743433.1 Capsicum annuum WRKY transcription factor-b (WRKY-b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615508.11e-139PREDICTED: probable WRKY transcription factor 75
RefseqXP_016446514.11e-139PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA26e-60WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLQ5DJU02e-80Q5DJU0_CAPAN; WRKY transcription factor-b
STRINGPGSC0003DMT4000563522e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22042461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-60WRKY DNA-binding protein 75